PET2BIDS
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pypet2bids
matlab
Spreadsheets
PET2BIDS
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Index
A
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B
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C
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D
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E
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F
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G
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I
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J
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L
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M
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O
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P
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R
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S
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T
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U
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V
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W
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Y
A
ad_hoc_checks() (in module pypet2bids.helper_functions)
ask_recording_type() (pypet2bids.convert_pmod_to_blood.PmodToBlood method)
B
bold_red (pypet2bids.helper_functions.CustomFormatter attribute)
C
check_for_dcm2niix() (pypet2bids.dcm2niix4pet.Dcm2niix4PET method)
check_for_interpolated_data() (pypet2bids.convert_pmod_to_blood.PmodToBlood method)
check_for_pet2bids_config() (pypet2bids.dcm2niix4pet.Dcm2niix4PET static method)
check_fraction_is_fraction() (pypet2bids.convert_pmod_to_blood.PmodToBlood method)
check_json() (in module pypet2bids.dcm2niix4pet)
check_meta_radio_inputs() (in module pypet2bids.dcm2niix4pet)
check_metaradioinputs() (in module matlab)
check_posix() (pypet2bids.dcm2niix4pet.Dcm2niix4PET static method)
check_time_info() (pypet2bids.convert_pmod_to_blood.PmodToBlood method)
check_units() (in module pypet2bids.helper_functions)
cli() (in module pypet2bids.convert_pmod_to_blood)
(in module pypet2bids.dcm2niix4pet)
(in module pypet2bids.ecat_cli)
(in module pypet2bids.multiple_spreadsheets)
collect_bids_part() (in module pypet2bids.helper_functions)
collect_date_time_from_file_name() (in module pypet2bids.dcm2niix4pet)
collect_specific_bytes() (in module pypet2bids.read_ecat)
collect_spreadsheets() (in module pypet2bids.helper_functions)
compress() (in module pypet2bids.helper_functions)
convert() (pypet2bids.dcm2niix4pet.Dcm2niix4PET method)
CustomFormatter (class in pypet2bids.helper_functions)
D
Dcm2niix4PET (class in pypet2bids.dcm2niix4pet)
dcm2niix4pet() (in module matlab)
decompress() (in module pypet2bids.helper_functions)
dicom_datetime_to_dcm2niix_time() (in module pypet2bids.dcm2niix4pet)
drop_row() (in module pypet2bids.helper_functions)
E
Ecat (class in pypet2bids.ecat)
ecat2nii() (in module matlab)
(in module pypet2bids.ecat2nii)
expand_path() (in module pypet2bids.helper_functions)
extract_affine() (pypet2bids.ecat.Ecat method)
extract_dicom_headers() (pypet2bids.dcm2niix4pet.Dcm2niix4PET method)
extract_metadata() (pypet2bids.dcm2niix4pet.Dcm2niix4PET method)
F
filter_bytes() (in module pypet2bids.read_ecat)
flatten_series() (in module pypet2bids.helper_functions)
flattenstruct() (in module matlab)
format() (pypet2bids.helper_functions.CustomFormatter method)
FORMATS (pypet2bids.helper_functions.CustomFormatter attribute)
G
get_buffer_size() (in module pypet2bids.read_ecat)
get_coordinates_containing() (in module pypet2bids.helper_functions)
get_directory_data() (in module pypet2bids.read_ecat)
get_ecat_bytes() (in module pypet2bids.read_ecat)
get_header_data() (in module pypet2bids.read_ecat)
get_pet_metadata() (in module matlab)
get_radionuclide() (in module pypet2bids.dcm2niix4pet)
get_recon_method() (in module matlab)
(in module pypet2bids.helper_functions)
get_version() (in module pypet2bids.helper_functions)
grey (pypet2bids.helper_functions.CustomFormatter attribute)
I
import_and_write_out_module() (in module pypet2bids.helper_functions)
is_numeric() (in module pypet2bids.helper_functions)
J
json_out() (pypet2bids.ecat.Ecat method)
jsonwrite() (in module matlab)
L
load_pet_bids_requirements_json() (in module pypet2bids.helper_functions)
load_pmod_file() (pypet2bids.convert_pmod_to_blood.PmodToBlood static method)
load_spread_sheet_data() (pypet2bids.dcm2niix4pet.Dcm2niix4PET method)
load_vars_from_config() (in module pypet2bids.helper_functions)
log() (in module pypet2bids.helper_functions)
M
main() (in module pypet2bids.convert_pmod_to_blood)
(in module pypet2bids.dcm2niix4pet)
(in module pypet2bids.ecat_cli)
make_nifti() (pypet2bids.ecat.Ecat method)
match_dicom_header_to_file() (pypet2bids.dcm2niix4pet.Dcm2niix4PET method)
matlab (module)
module
pypet2bids
pypet2bids.convert_pmod_to_blood
pypet2bids.dcm2niix4pet
pypet2bids.ecat
pypet2bids.ecat2nii
pypet2bids.ecat_cli
pypet2bids.helper_functions
pypet2bids.multiple_spreadsheets
pypet2bids.read_ecat
pypet2bids.sidecar
O
open_meta_data() (in module pypet2bids.helper_functions)
(pypet2bids.dcm2niix4pet.Dcm2niix4PET method)
P
parse_this_date() (in module pypet2bids.ecat)
ParseKwargs (class in pypet2bids.helper_functions)
PmodToBlood (class in pypet2bids.convert_pmod_to_blood)
populate_sidecar() (pypet2bids.ecat.Ecat method)
post_dcm2niix() (pypet2bids.dcm2niix4pet.Dcm2niix4PET method)
prune_sidecar() (pypet2bids.ecat.Ecat method)
pypet2bids
module
pypet2bids.convert_pmod_to_blood
module
pypet2bids.dcm2niix4pet
module
pypet2bids.ecat
module
pypet2bids.ecat2nii
module
pypet2bids.ecat_cli
module
pypet2bids.helper_functions
module
pypet2bids.multiple_spreadsheets
module
pypet2bids.read_ecat
module
pypet2bids.sidecar
module
R
read_bytes() (in module pypet2bids.read_ecat)
read_ecat() (in module pypet2bids.read_ecat)
read_multi_subject_spreadsheets() (in module pypet2bids.multiple_spreadsheets)
readECAT7() (in module matlab)
red (pypet2bids.helper_functions.CustomFormatter attribute)
replace_nones() (in module pypet2bids.helper_functions)
reset (pypet2bids.helper_functions.CustomFormatter attribute)
run_dcm2niix() (pypet2bids.dcm2niix4pet.Dcm2niix4PET method)
S
sanitize_bad_path() (in module pypet2bids.helper_functions)
scale_time_rename_columns() (pypet2bids.convert_pmod_to_blood.PmodToBlood method)
set_dcm2niix_path() (in module pypet2bids.helper_functions)
show_affine() (pypet2bids.ecat.Ecat method)
show_directory_table() (pypet2bids.ecat.Ecat method)
show_header() (pypet2bids.ecat.Ecat method)
show_sidecar() (pypet2bids.ecat.Ecat method)
show_subheaders() (pypet2bids.ecat.Ecat method)
single_spreadsheet_reader() (in module pypet2bids.helper_functions)
T
transform_row_to_dict() (in module pypet2bids.helper_functions)
translate_metadata() (in module pypet2bids.helper_functions)
type_cast_cli_input() (in module pypet2bids.convert_pmod_to_blood)
U
update_json_with_dicom_value() (in module pypet2bids.dcm2niix4pet)
updatjsonpetfile() (in module matlab)
V
very_tolerant_literal_eval() (in module pypet2bids.helper_functions)
W
write_multi_subject_spreadsheets() (in module pypet2bids.multiple_spreadsheets)
write_out_jsons() (pypet2bids.convert_pmod_to_blood.PmodToBlood method)
write_out_module() (in module pypet2bids.helper_functions)
write_out_tsvs() (pypet2bids.convert_pmod_to_blood.PmodToBlood method)
Y
yellow (pypet2bids.helper_functions.CustomFormatter attribute)
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